Package: ringbp 0.1.2

Joel Hellewell
ringbp: Simulate and evaluate contact tracing scenarios
A package to simulate transmission of an infectious disease and associated efforts to trace conacts and reduce onwards transmission.
Authors:
ringbp_0.1.2.tar.gz
ringbp_0.1.2.zip(r-4.7)ringbp_0.1.2.zip(r-4.6)ringbp_0.1.2.zip(r-4.5)
ringbp_0.1.2.tgz(r-4.6-any)ringbp_0.1.2.tgz(r-4.5-any)
ringbp_0.1.2.tar.gz(r-4.7-any)ringbp_0.1.2.tar.gz(r-4.6-any)
ringbp_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ringbp/json (API)
NEWS
| # Install 'ringbp' in R: |
| install.packages('ringbp', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiforecasts/ringbp/issues
Pkgdown/docs site:https://epiforecasts.io
controlling-outbreakstransmission
Last updated from:c64bd67392 (on v0.1.2). Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 115 | ||
| source / vignettes | OK | 152 | ||
| linux-release-x86_64 | OK | 161 | ||
| macos-release-arm64 | OK | 106 | ||
| macos-oldrel-arm64 | OK | 84 | ||
| windows-devel | OK | 138 | ||
| windows-release | OK | 116 | ||
| windows-oldrel | OK | 117 | ||
| wasm-release | OK | 101 |
Exports:detect_extinctdist_setupextinct_probinf_fnoutbreak_modeloutbreak_setupoutbreak_stepparameter_sweepscenario_sim
Dependencies:clicodetoolsdata.tabledigestfuturefuture.applyglobalsgluelatticelifecyclelistenvmagrittrMASSMatrixMatrixModelsmnormtnumDerivparallellypurrrquantregrlangsnSparseMsurvivalvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate whether outbreaks went extinct or not | detect_extinct |
| Create partial function to sample from gamma distributions | dist_setup |
| Calculate proportion of runs that have controlled outbreak | extinct_prob |
| Samples the serial interval for given incubation period samples | inf_fn |
| Run a single instance of the branching process model | outbreak_model |
| Set up initial cases for branching process | outbreak_setup |
| Move forward one generation in the branching process | outbreak_step |
| Sweep across parameters | parameter_sweep |
| Run a specified number of simulations with identical parameters | scenario_sim |