{
  "_id": "6a3025d23efcd9bda433fd55",
  "Type": "Package",
  "Package": "ringbp",
  "Title": "Simulate and Evaluate Targeted Interventions in Infectious\nDisease Outbreaks",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(\"Joel\", \"Hellewell\", , \"Joel.Hellewell@lshtm.ac.uk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-2683-0849\")),\nperson(\"Sam\", \"Abbott\", , \"contact@samabbott.co.uk\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-8057-8037\")),\nperson(\"Amy\", \"Gimma\", , \"amy.gimma@lshtm.ac.uk\", role = \"aut\"),\nperson(\"Tim\", \"Lucas\", , \"tim.lucas@leicester.ac.uk\", role = \"aut\"),\nperson(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = \"aut\"),\nperson(\"Adam\", \"Kucharski\", , \"adam.kucharski@lshtm.ac.uk\", role = \"aut\"),\nperson(\"Hugo\", \"Gruson\", , \"hugo.gruson@data.org\", role = \"ctb\",\ncomment = c(ORCID = \"https://orcid.org/0000-0002-4094-1476\")),\nperson(\"Carl A. B.\", \"Pearson\", , \"carl.ab.pearson@gmail.com\", role = c(\"aut\", \"rev\"),\ncomment = c(ORCID = \"0000-0003-0701-7860\")),\nperson(\"Joshua W.\", \"Lambert\", , \"joshua.lambert@lshtm.ac.uk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5218-3046\"))\n)",
  "Description": "Branching process simulation model of infectious disease\ntransmission with flexible parameterisation of epidemiology and\ntargeted interventions, including isolation, contact tracing\nand quarantine, to reduce transmission, together with functions\nto evaluate outbreak control.  Introduced in Hellewell et al.\n(2020) <doi:10.1016/S2214-109X(20)30074-7>.",
  "License": "MIT + file LICENSE",
  "URL": "https://epiforecasts.io/ringbp/,\nhttps://github.com/epiforecasts/ringbp",
  "BugReports": "https://github.com/epiforecasts/ringbp/issues",
  "VignetteBuilder": "knitr",
  "Config/roxyglobals/filename": "globals.R",
  "Config/roxyglobals/unique": "FALSE",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Language": "en-GB",
  "Roxygen": "list(markdown = TRUE, roclets = c(\"collate\", \"namespace\",\n\"rd\", \"roxyglobals::global_roclet\"))",
  "RoxygenNote": "7.3.3",
  "Repository": "https://epiforecasts.r-universe.dev",
  "Date/Publication": "2026-06-15 14:31:28 UTC",
  "RemoteUrl": "https://github.com/epiforecasts/ringbp",
  "RemoteRef": "v1.0.0",
  "RemoteSha": "24522892f7240324d1b4996954945390897e0604",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-15 16:05:49 UTC",
    "User": "root"
  },
  "Author": "Joel Hellewell [aut] (ORCID: <https://orcid.org/0000-0003-2683-0849>),\nSam Abbott [aut] (ORCID: <https://orcid.org/0000-0001-8057-8037>),\nAmy Gimma [aut],\nTim Lucas [aut],\nSebastian Funk [aut],\nAdam Kucharski [aut],\nHugo Gruson [ctb] (ORCID: <https://orcid.org/0000-0002-4094-1476>),\nCarl A. B. Pearson [aut, rev] (ORCID:\n<https://orcid.org/0000-0003-0701-7860>),\nJoshua W. Lambert [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5218-3046>)",
  "Maintainer": "Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>",
  "MD5sum": "c597c81ecdd2f1a2b15884bbcefaeee6",
  "_user": "epiforecasts",
  "_type": "src",
  "_file": "ringbp_1.0.0.tar.gz",
  "_fileid": "8b306e3922cf20276fc8a3dba62755a949e13a9b0a761b1de3f3be563f6b6a25",
  "_filesize": 577678,
  "_sha256": "8b306e3922cf20276fc8a3dba62755a949e13a9b0a761b1de3f3be563f6b6a25",
  "_created": "2026-06-15T16:05:49.000Z",
  "_published": "2026-06-15T16:18:26.653Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 81467219395,
      "time": 133,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7643887641"
    },
    {
      "job": 81467219727,
      "time": 145,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7643897420"
    },
    {
      "job": 81467219533,
      "time": 130,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7644141379"
    },
    {
      "job": 81467219416,
      "time": 109,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7644093056"
    },
    {
      "job": 81466057858,
      "time": 306,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7643827857"
    },
    {
      "job": 81467219461,
      "time": 153,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7643898927"
    },
    {
      "job": 81467219432,
      "time": 86,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7643868246"
    },
    {
      "job": 81467219404,
      "time": 91,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7643869715"
    },
    {
      "job": 81467219463,
      "time": 85,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7643866554"
    }
  ],
  "_buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/epiforecasts/ringbp",
  "_commit": {
    "id": "24522892f7240324d1b4996954945390897e0604",
    "author": "epiforecasts-workflows[bot] <243357408+epiforecasts-workflows[bot]@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Automatic README update (#241)\n\nCo-authored-by: github-merge-queue[bot] <118344674+github-merge-queue[bot]@users.noreply.github.com>",
    "time": 1781533888
  },
  "_maintainer": {
    "name": "Joshua W. Lambert",
    "email": "joshua.lambert@lshtm.ac.uk",
    "login": "joshwlambert",
    "bluesky": "@jwlambert.bsky.social",
    "orcid": "0000-0001-5218-3046",
    "description": "Software engineer | evolutionary biologist | island biogeographer",
    "uuid": 46606402
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "sn",
      "role": "Imports"
    },
    {
      "package": "future",
      "role": "Suggests"
    },
    {
      "package": "future.apply",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "roxyglobals",
      "version": ">= 1.0.0",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tinyplot",
      "role": "Suggests"
    }
  ],
  "_owner": "epiforecasts",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-24",
      "n": 2
    },
    {
      "week": "2025-25",
      "n": 2
    },
    {
      "week": "2025-26",
      "n": 1
    },
    {
      "week": "2025-27",
      "n": 2
    },
    {
      "week": "2025-29",
      "n": 1
    },
    {
      "week": "2025-38",
      "n": 21
    },
    {
      "week": "2025-39",
      "n": 1
    },
    {
      "week": "2025-41",
      "n": 1
    },
    {
      "week": "2025-43",
      "n": 1
    },
    {
      "week": "2025-45",
      "n": 2
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-48",
      "n": 1
    },
    {
      "week": "2025-49",
      "n": 9
    },
    {
      "week": "2026-04",
      "n": 6
    },
    {
      "week": "2026-05",
      "n": 3
    },
    {
      "week": "2026-07",
      "n": 3
    },
    {
      "week": "2026-08",
      "n": 2
    },
    {
      "week": "2026-10",
      "n": 4
    },
    {
      "week": "2026-16",
      "n": 2
    },
    {
      "week": "2026-20",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 4
    },
    {
      "week": "2026-22",
      "n": 4
    },
    {
      "week": "2026-25",
      "n": 2
    }
  ],
  "_tags": [
    {
      "name": "v1.0.0",
      "date": "2026-06-15"
    }
  ],
  "_topics": [
    "controlling-outbreaks",
    "transmission"
  ],
  "_stars": 17,
  "_contributors": [
    {
      "user": "seabbs",
      "count": 71,
      "uuid": 20317649
    },
    {
      "user": "sbfnk",
      "count": 70,
      "uuid": 1156307
    },
    {
      "user": "joshwlambert",
      "count": 42,
      "uuid": 46606402
    },
    {
      "user": "jhellewell14",
      "count": 41,
      "uuid": 10957016
    },
    {
      "user": "timcdlucas",
      "count": 38,
      "uuid": 3583796
    },
    {
      "user": "amygimma",
      "count": 9,
      "uuid": 3540603
    },
    {
      "user": "bisaloo",
      "count": 5,
      "uuid": 10783929
    },
    {
      "user": "pearsonca",
      "count": 3,
      "uuid": 1828039
    }
  ],
  "_userbio": {
    "uuid": 54675094,
    "type": "organization",
    "name": "Epiforecasts",
    "followers": 76,
    "description": "Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ringbp"
  },
  "_devurl": "https://github.com/epiforecasts/ringbp",
  "_pkgdown": "https://epiforecasts.io/ringbp/",
  "_searchresults": 24,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/ringbp.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "delay_opts",
    "detect_extinct",
    "event_prob_opts",
    "extinct_prob",
    "incubation_to_generation_time",
    "intervention_opts",
    "offspring_opts",
    "outbreak_model",
    "outbreak_setup",
    "outbreak_step",
    "scenario_sim",
    "sim_opts"
  ],
  "_help": [
    {
      "page": "delay_opts",
      "title": "Create a list of delay distributions to run the 'ringbp' model",
      "topics": [
        "delay_opts"
      ]
    },
    {
      "page": "event_prob_opts",
      "title": "Create a list of event probabilities to run the 'ringbp' model",
      "topics": [
        "event_prob_opts"
      ]
    },
    {
      "page": "extinction",
      "title": "Outbreak extinction functions",
      "topics": [
        "detect_extinct",
        "extinction",
        "extinct_prob"
      ]
    },
    {
      "page": "incubation_to_generation_time",
      "title": "Convert symptom onset times to generation times",
      "topics": [
        "incubation_to_generation_time"
      ]
    },
    {
      "page": "intervention_opts",
      "title": "Create a list of intervention settings to run the 'ringbp' model",
      "topics": [
        "intervention_opts"
      ]
    },
    {
      "page": "offspring_opts",
      "title": "Create a list of offspring distributions to run the 'ringbp' model",
      "topics": [
        "offspring_opts"
      ]
    },
    {
      "page": "outbreak_model",
      "title": "Run a single instance of the branching process model",
      "topics": [
        "outbreak_model"
      ]
    },
    {
      "page": "outbreak_setup",
      "title": "Set up initial cases for branching process",
      "topics": [
        "outbreak_setup"
      ]
    },
    {
      "page": "outbreak_step",
      "title": "Move forward one generation in the branching process",
      "topics": [
        "outbreak_step"
      ]
    },
    {
      "page": "scenario_sim",
      "title": "Run a specified number of simulations with identical parameters",
      "topics": [
        "scenario_sim"
      ]
    },
    {
      "page": "sim_opts",
      "title": "Create a list of simulation control options for the 'ringbp' model",
      "topics": [
        "sim_opts"
      ]
    }
  ],
  "_pkglogo": "https://github.com/epiforecasts/ringbp/raw/v1.0.0/man/figures/logo.svg",
  "_readme": "https://github.com/epiforecasts/ringbp/raw/v1.0.0/README.md",
  "_rundeps": [
    "backports",
    "checkmate",
    "data.table",
    "lattice",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mnormt",
    "numDeriv",
    "quantreg",
    "sn",
    "SparseM",
    "survival"
  ],
  "_vignettes": [
    {
      "source": "ringbp-model.Rmd",
      "filename": "ringbp-model.html",
      "title": "{ringbp} Model Description",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Model Overview",
        "Disease natural history scenarios",
        "Transmission scenarios with interventions",
        "Presymptomatic transmission scenarios with interventions",
        "Transmission in isolation",
        "Model parameters",
        "Further information"
      ],
      "created": "2026-02-16 10:27:03",
      "modified": "2026-06-15 14:06:38",
      "commits": 5
    },
    {
      "source": "ringbp.Rmd",
      "filename": "ringbp.html",
      "title": "Getting started with {ringbp}",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Model overview",
        "Specifying model components",
        "Offspring distributions",
        "Delay distributions",
        "Event probabilities",
        "Intervention options",
        "Simulation controls",
        "Running outbreak simulations",
        "Visualising results",
        "Summarising outcomes",
        "Simplified COVID-19 contact tracing effectiveness analysis",
        "Define epidemiological parameters",
        "Run the simulation",
        "{ringbp} Use Cases",
        "References"
      ],
      "created": "2026-02-16 11:33:45",
      "modified": "2026-06-15 14:06:38",
      "commits": 5
    },
    {
      "source": "parameter-sweep.Rmd",
      "filename": "parameter-sweep.html",
      "title": "Scenario parameter sweep",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Set up scenario parameter space",
        "Parameter sweep across scenarios",
        "Storing simulations with scenarios",
        "Running scenarios in parallel"
      ],
      "created": "2025-06-18 09:02:34",
      "modified": "2026-05-20 20:52:11",
      "commits": 4
    }
  ],
  "_score": 6.993577298177411,
  "_indexed": true,
  "_nocasepkg": "ringbp",
  "_universes": [
    "epiforecasts",
    "joshwlambert"
  ],
  "_previous": "0.1.2",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-15T16:07:56.000Z",
      "distro": "noble",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "6957e7719e843a87c415bdb26380975a2d36966f4b9cab77a0e087994288dcf8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-15T16:08:17.000Z",
      "distro": "noble",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "0e844d1aaea9fb531b730e04841704ffca41d160dbbd38cdf3bff795f490ae85",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-15T16:17:55.000Z",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "341df80ffde8fba488116d084beea0b7c08ca772e9811a91765cf7cc5b438c30",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-06-15T16:15:59.000Z",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "a3e2b75e014ebd92d48605c8b2bcdf2dff80803fda76997cdbfa16b85b0a9ddb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-06-15T16:08:43.000Z",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "5cb5ef361d83b7842fd93db631cadc4263a23c173a9a7da0f65a626f4bd7a74e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-15T16:07:05.000Z",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "70ccbc95f42dfbf31eb3b52009b042b70a654b8b8b8ad023e266fe21eb909b25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-15T16:07:06.000Z",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "8b181aeddd6a54ef541c7519bfb0d6d5148c441490bde72c708b4c2c8961f7ac",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-06-15T16:06:58.000Z",
      "commit": "24522892f7240324d1b4996954945390897e0604",
      "fileid": "b97a5a4ccec6218c00fd5560c7cbb21a080109f4f35afdcb3d6d0c25f14dc824",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27559091620"
    }
  ]
}