Package: rbi.helpers 0.4.0
Sebastian Funk
rbi.helpers: 'rbi' Helper Functions
Contains a collection of helper functions to use with 'rbi', the R interface to 'LibBi', described in Murray et al. (2015) <doi:10.18637/jss.v067.i10>. It contains functions to adapt the proposal distribution and number of particles in particle Markov-Chain Monte Carlo, as well as calculating the Deviance Information Criterion (DIC) and converting between times in 'LibBi' results and R time/dates.
Authors:
rbi.helpers_0.4.0.tar.gz
rbi.helpers_0.4.0.zip(r-4.5)rbi.helpers_0.4.0.zip(r-4.4)rbi.helpers_0.4.0.zip(r-4.3)
rbi.helpers_0.4.0.tgz(r-4.4-any)rbi.helpers_0.4.0.tgz(r-4.3-any)
rbi.helpers_0.4.0.tar.gz(r-4.5-noble)rbi.helpers_0.4.0.tar.gz(r-4.4-noble)
rbi.helpers_0.4.0.tgz(r-4.4-emscripten)rbi.helpers_0.4.0.tgz(r-4.3-emscripten)
rbi.helpers.pdf |rbi.helpers.html✨
rbi.helpers/json (API)
NEWS
| # Install 'rbi.helpers' in R: |
| install.packages('rbi.helpers', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sbfnk/rbi.helpers/issues
Last updated 12 months agofrom:4df773a031
Exports:acceptance_rateadapt_particlesadapt_proposalDICnumeric_to_timetime_to_numeric
Dependencies:clicpp11data.tablegenericsgluelatticelifecyclelubridatemagrittrMatrixncdf4plyrprocessxpsR6rbiRcppreshape2rlangstringistringrtimechangevctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute acceptance rate | acceptance_rate |
| Adapt the number of particles | adapt_particles |
| Adapt the proposal distribution of MCMC using the covariance of samples | adapt_proposal |
| Compute Deviance Information Criterion (DIC) for a libbi model | DIC DIC.libbi |
| Convert numeric times to actual times or dates | numeric_to_time |
| Convert actual times or dates to numeric times | time_to_numeric |
