{
  "_id": "6a2cf8203efcd9bda42e4ee9",
  "Package": "rbi.helpers",
  "Version": "0.4.1",
  "Title": "'rbi' Helper Functions",
  "Authors@R": "c(person(\ngiven = \"Sebastian\",\nfamily = \"Funk\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sebastian.funk@lshtm.ac.uk\",\ncomment = c(ORCID = \"0000-0002-2842-3406\")\n))",
  "Description": "Contains a collection of helper functions to use with\n'rbi', the R interface to 'LibBi', described in Murray et al.\n(2015) <doi:10.18637/jss.v067.i10>. It contains functions to\nadapt the proposal distribution and number of particles in\nparticle Markov-Chain Monte Carlo, as well as calculating the\nDeviance Information Criterion (DIC) and converting between\ntimes in 'LibBi' results and R time/dates.",
  "License": "GPL-3",
  "URL": "https://libbi.org, https://github.com/sbfnk/rbi,\nhttps://github.com/sbfnk/rbi.helpers",
  "BugReports": "https://github.com/sbfnk/rbi.helpers/issues",
  "SystemRequirements": "libbi (>= 1.4.2)",
  "LazyLoad": "no",
  "RoxygenNote": "7.3.2",
  "NeedsCompilation": "no",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libicu-dev libnetcdf-dev",
  "Repository": "https://epiforecasts.r-universe.dev",
  "Date/Publication": "2026-02-09 11:59:02 UTC",
  "RemoteUrl": "https://github.com/sbfnk/rbi.helpers",
  "RemoteRef": "v0.4.1",
  "RemoteSha": "516303354fcb158eb579ff6622a10532a3f4d494",
  "Packaged": {
    "Date": "2026-06-13 06:23:35 UTC",
    "User": "root"
  },
  "Author": "Sebastian Funk [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-2842-3406>)",
  "Maintainer": "Sebastian Funk <sebastian.funk@lshtm.ac.uk>",
  "MD5sum": "67aaf8b339ba67c2097722d2f0dd38a0",
  "_user": "epiforecasts",
  "_type": "src",
  "_file": "rbi.helpers_0.4.1.tar.gz",
  "_fileid": "2254652da08a1ff0e386116981b61ba9daf7ebbb592a417c5ca246c083a10403",
  "_filesize": 222434,
  "_sha256": "2254652da08a1ff0e386116981b61ba9daf7ebbb592a417c5ca246c083a10403",
  "_created": "2026-06-13T06:23:35.000Z",
  "_published": "2026-06-13T06:26:40.515Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 81168885502,
      "time": 147,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7608143736"
    },
    {
      "job": 81168885498,
      "time": 145,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608143513"
    },
    {
      "job": 81168885500,
      "time": 86,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7608135757"
    },
    {
      "job": 81168885501,
      "time": 87,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608135750"
    },
    {
      "job": 81168680860,
      "time": 188,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608124913"
    },
    {
      "job": 81168885496,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608138012"
    },
    {
      "job": 81168885516,
      "time": 98,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7608137212"
    },
    {
      "job": 81168885514,
      "time": 98,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7608137284"
    },
    {
      "job": 81168885517,
      "time": 101,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7608137599"
    }
  ],
  "_buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/sbfnk/rbi.helpers",
  "_commit": {
    "id": "516303354fcb158eb579ff6622a10532a3f4d494",
    "author": "Sebastian Funk <sebastian.funk@lshtm.ac.uk>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Release rbi.helpers 0.4.1 (#34)\n\n* fix CRAN issues\n\n* add news item\n\n* fix URL\n\n* add CRAN comments\n\n* satisfy lintr\n\n* update spacing\n\n* indent\n\n* Increment version number to 0.4.1\n\n* Add apt-get update before installing libbi in CI workflows\n\nCo-authored-by: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>\n\n* Add apt-get update to test-coverage workflow\n\nCo-authored-by: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>\n\n---------\n\nCo-authored-by: sbfnk-bot <242615673+sbfnk-bot@users.noreply.github.com>",
    "time": 1770638342
  },
  "_maintainer": {
    "name": "Sebastian Funk",
    "email": "sebastian.funk@lshtm.ac.uk",
    "login": "sbfnk",
    "mastodon": "@sbfnk@fosstodon.org",
    "bluesky": "@sbfnk.bsky.social",
    "orcid": "0000-0002-2842-3406",
    "description": "Professor of Infectious Disease Dynamics at LSHTM. epiforecasts.io",
    "uuid": 1156307
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "rbi",
      "version": ">= 0.10.0",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "version": ">= 3.2.0",
      "role": "Suggests"
    },
    {
      "package": "stringi",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "sbfnk",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-39",
      "n": 11
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-48",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.4.1",
      "date": "2026-02-09"
    }
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "sbfnk",
      "count": 508,
      "uuid": 1156307
    },
    {
      "user": "ffinger",
      "count": 1,
      "uuid": 12323626
    }
  ],
  "_userbio": {
    "uuid": 54675094,
    "type": "organization",
    "name": "Epiforecasts",
    "description": "Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses."
  },
  "_downloads": {
    "count": 219,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rbi.helpers"
  },
  "_mentions": 2,
  "_devurl": "https://github.com/sbfnk/rbi.helpers",
  "_searchresults": 418,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/rbi.helpers.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sbfnk/rbi.helpers",
  "_realowner": "sbfnk",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.3.0",
      "date": "2019-02-22"
    },
    {
      "version": "0.3.1",
      "date": "2019-07-10"
    },
    {
      "version": "0.3.2",
      "date": "2020-06-18"
    },
    {
      "version": "0.3.3",
      "date": "2022-11-16"
    },
    {
      "version": "0.4.0",
      "date": "2023-08-24"
    },
    {
      "version": "0.4.1",
      "date": "2025-09-26"
    }
  ],
  "_exports": [
    "acceptance_rate",
    "adapt_particles",
    "adapt_proposal",
    "DIC",
    "numeric_to_time",
    "time_to_numeric"
  ],
  "_help": [
    {
      "page": "acceptance_rate",
      "title": "Compute acceptance rate",
      "topics": [
        "acceptance_rate"
      ]
    },
    {
      "page": "adapt_particles",
      "title": "Adapt the number of particles",
      "topics": [
        "adapt_particles"
      ]
    },
    {
      "page": "adapt_proposal",
      "title": "Adapt the proposal distribution of MCMC using the covariance of samples",
      "topics": [
        "adapt_proposal"
      ]
    },
    {
      "page": "DIC",
      "title": "Compute Deviance Information Criterion (DIC) for a libbi model",
      "topics": [
        "DIC",
        "DIC.libbi"
      ]
    },
    {
      "page": "numeric_to_time",
      "title": "Convert numeric times to actual times or dates",
      "topics": [
        "numeric_to_time"
      ]
    },
    {
      "page": "time_to_numeric",
      "title": "Convert actual times or dates to numeric times",
      "topics": [
        "time_to_numeric"
      ]
    }
  ],
  "_readme": "https://github.com/sbfnk/rbi.helpers/raw/v0.4.1/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "data.table",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "lubridate",
    "magrittr",
    "Matrix",
    "ncdf4",
    "plyr",
    "processx",
    "ps",
    "R6",
    "rbi",
    "Rcpp",
    "reshape2",
    "rlang",
    "stringi",
    "stringr",
    "timechange",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "rbi.helpers.Rmd",
      "filename": "rbi.helpers.html",
      "title": "Introduction to rbi.helpers",
      "author": "Sebastian Funk",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation",
        "Loading the package",
        "Loading the model and generating a synthetic dataset",
        "Adapt the number of particles",
        "Adapt the proposal distribution",
        "Compute DIC",
        "Convert between LibBi times and actual times or dates",
        "Create inference chains"
      ],
      "created": "2023-07-26 14:12:33",
      "modified": "2023-07-26 14:12:33",
      "commits": 1
    }
  ],
  "_score": 6.8252962644309605,
  "_indexed": false,
  "_nocasepkg": "rbi.helpers",
  "_universes": [
    "epiforecasts"
  ],
  "_indexurl": "https://sbfnk.r-universe.dev/rbi.helpers",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.4.1",
      "date": "2026-06-13T06:25:51.000Z",
      "distro": "noble",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "b20d3c4aca1b2aba22ba5434838726d7a1dd5a4b5fdf2608df5e35e88a6cc711",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.4.1",
      "date": "2026-06-13T06:25:49.000Z",
      "distro": "noble",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "009d3e330bb364ea6ce05241e0efcace5efe90c6e2640c8f90276d6298830bda",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.4.1",
      "date": "2026-06-13T06:24:58.000Z",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "398096f38d6f5d16bc367b96e35b88389dce25ef4c2e11f6a31850d14a4259c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.4.1",
      "date": "2026-06-13T06:24:57.000Z",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "58b177aa545085494bf8e9f33e374cc21abcfa9904fefe20a0b13d44f06efdd8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.4.1",
      "date": "2026-06-13T06:25:36.000Z",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "56876b9012e30dacc487b199283a06794ce00462720c919d07d3cc7c60ee525a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.4.1",
      "date": "2026-06-13T06:24:50.000Z",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "2d1ac4f32cd722aeb167e0ba892dfb52755065b10a95d969698e1e77ccc93aa6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.4.1",
      "date": "2026-06-13T06:24:52.000Z",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "5d6be4e3ad32a6d89d0bca39cce9c9e8df5f38656847c9fe1b55e1522f178fb5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.4.1",
      "date": "2026-06-13T06:24:53.000Z",
      "commit": "516303354fcb158eb579ff6622a10532a3f4d494",
      "fileid": "57eeea3118f5a7d887340140cb25d20cddb45b7ef7a0e5054cb42f792acfd3a2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/27458918068"
    }
  ]
}