Package: idbrms 0.0.0.9000
Sam Abbott
idbrms: Infectious Disease Modelling Using brms
Infectious disease modelling using brms.
Authors:
idbrms_0.0.0.9000.tar.gz
idbrms_0.0.0.9000.zip(r-4.5)idbrms_0.0.0.9000.zip(r-4.4)idbrms_0.0.0.9000.zip(r-4.3)
idbrms_0.0.0.9000.tgz(r-4.4-any)idbrms_0.0.0.9000.tgz(r-4.3-any)
idbrms_0.0.0.9000.tar.gz(r-4.5-noble)idbrms_0.0.0.9000.tar.gz(r-4.4-noble)
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idbrms.pdf |idbrms.html✨
idbrms/json (API)
| # Install 'idbrms' in R: |
| install.packages('idbrms', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiforecasts/idbrms/issues
brmsinfectious-disease-modelsopensource
Last updated 2 years agofrom:f5a1c25fde
Exports:expose_idbrms_stan_fnsid_formulaid_priorsid_stancodeidbrmidbrms_stan_chunkprepare
Dependencies:abindbackportsbayesplotBHbridgesamplingbrmsBrobdingnagcallrcheckmateclicodacodetoolscolorspacedata.tabledescdigestdistributionaldplyrfansifarverfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandlabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnleqslvnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreshape2rlangrstanrstantoolsscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Expose package stan functions in R | expose_idbrms_stan_fns |
| Define a formula for the convolution model | id_formula id_formula.idbrms_convolution |
| Define model specific priors | id_priors |
| Define priors for the delay convolution model | id_priors.idbrms_convolution |
| Define model specific stancode | id_stancode |
| Define stan code for a delay convolution model | id_stancode.idbrms_convolution |
| Interface for infectious disease modelling using brms. | idbrm |
| Delay Convolution Model | idbrm.idbrms_convolution |
| Infectious disease modelling wrapper for brm | idbrmfit |
| Read in a idbrms Stan code chunk | idbrms_stan_chunk |
| Label a idbrms stan model with a version indicator | idbrms_version_stanvar |
| Prepare data for modelling with idbrm | prepare prepare.default |
| Prepare data for fitting using a convolution model | prepare.idbrms_convolution |
