{
  "_id": "6a4df3a6e691af43f13de97c",
  "Package": "idbrms",
  "Title": "Infectious Disease Modelling Using brms",
  "Version": "0.0.0.9000",
  "Authors@R": "c(\nperson(given = \"Sam\",\nfamily = \"Abbott\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sam.abbott@lshtm.ac.uk\",\ncomment = c(ORCID = \"0000-0001-8057-8037\")),\nperson(\"Sebastian\", \"Funk\",\nemail = \"sebastian.funk@lshtm.ac.uk\",\nrole = c(\"aut\")))",
  "Description": "Infectious disease modelling using brms.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.1.1",
  "Language": "en-US",
  "Config/pak/sysreqs": "make libicu-dev",
  "Repository": "https://epiforecasts.r-universe.dev",
  "Date/Publication": "2022-09-05 16:24:07 UTC",
  "RemoteUrl": "https://github.com/epiforecasts/idbrms",
  "RemoteRef": "HEAD",
  "RemoteSha": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-08 06:47:22 UTC",
    "User": "root"
  },
  "Author": "Sam Abbott [aut, cre] (ORCID: <https://orcid.org/0000-0001-8057-8037>),\nSebastian Funk [aut]",
  "Maintainer": "Sam Abbott <sam.abbott@lshtm.ac.uk>",
  "_user": "epiforecasts",
  "_type": "src",
  "_file": "idbrms_0.0.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/97fb42e6cf55ad9b054381bb7a3b2575c545375539b1e15bb19fdd91e9f18f79",
  "_filesize": 204203,
  "_sha256": "97fb42e6cf55ad9b054381bb7a3b2575c545375539b1e15bb19fdd91e9f18f79",
  "_expires": "2026-10-16T06:52:20.000Z",
  "_created": "2026-07-08T06:47:22.000Z",
  "_published": "2026-07-08T06:52:22.263Z",
  "_jobs": [
    {
      "job": 85805178534,
      "time": 241,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8160391942"
    },
    {
      "job": 85805178500,
      "time": 253,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8160395757"
    },
    {
      "job": 85805178494,
      "time": 193,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8160376565"
    },
    {
      "job": 85805178540,
      "time": 122,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8160354013"
    },
    {
      "job": 85804609134,
      "time": 219,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8160313199"
    },
    {
      "job": 85805178528,
      "time": 157,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8160365264"
    },
    {
      "job": 85805178532,
      "time": 202,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8160379599"
    },
    {
      "job": 85805178585,
      "time": 201,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8160379738"
    },
    {
      "job": 85805178510,
      "time": 192,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8160376733"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837",
  "_status": "success",
  "_upstream": "https://github.com/epiforecasts/idbrms",
  "_commit": {
    "id": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
    "author": "Sam Abbott <contact@samabbott.co.uk>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #10 from epiforecasts/rownames-vector-names\n\n",
    "time": 1662395047
  },
  "_maintainer": {
    "name": "Sam Abbott",
    "email": "sam.abbott@lshtm.ac.uk",
    "login": "seabbs",
    "bluesky": "@seabbs.bsky.social",
    "orcid": "0000-0001-8057-8037",
    "description": "Real-time infectious disease modelling. Developing tools and methods for outbreak response, routine surveillance, and pandemic preparedness.",
    "uuid": 20317649
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "brms",
      "role": "Imports"
    },
    {
      "package": "rstan",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    }
  ],
  "_owner": "epiforecasts",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "brms",
    "infectious-disease-models",
    "opensource"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "seabbs",
      "count": 51,
      "uuid": 20317649
    },
    {
      "user": "bisaloo",
      "count": 2,
      "uuid": 10783929
    },
    {
      "user": "sbfnk",
      "count": 2,
      "uuid": 1156307
    }
  ],
  "_userbio": {
    "uuid": 54675094,
    "type": "organization",
    "name": "Epiforecasts",
    "followers": 76,
    "description": "Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/idbrms"
  },
  "_devurl": "https://github.com/epiforecasts/idbrms",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/idbrms.html",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "expose_idbrms_stan_fns",
    "id_formula",
    "id_priors",
    "id_stancode",
    "idbrm",
    "idbrms_stan_chunk",
    "prepare"
  ],
  "_help": [
    {
      "page": "expose_idbrms_stan_fns",
      "title": "Expose package stan functions in R",
      "topics": [
        "expose_idbrms_stan_fns"
      ]
    },
    {
      "page": "id_formula",
      "title": "Define a formula for the convolution model",
      "topics": [
        "id_formula",
        "id_formula.idbrms_convolution"
      ]
    },
    {
      "page": "id_priors",
      "title": "Define model specific priors",
      "topics": [
        "id_priors"
      ]
    },
    {
      "page": "id_priors.idbrms_convolution",
      "title": "Define priors for the delay convolution model",
      "topics": [
        "id_priors.idbrms_convolution"
      ]
    },
    {
      "page": "id_stancode",
      "title": "Define model specific stancode",
      "topics": [
        "id_stancode"
      ]
    },
    {
      "page": "id_stancode.idbrms_convolution",
      "title": "Define stan code for a delay convolution model",
      "topics": [
        "id_stancode.idbrms_convolution"
      ]
    },
    {
      "page": "brmid",
      "title": "Interface for infectious disease modelling using brms.",
      "topics": [
        "idbrm"
      ]
    },
    {
      "page": "idbrm.idbrms_convolution",
      "title": "Delay Convolution Model",
      "topics": [
        "idbrm.idbrms_convolution"
      ]
    },
    {
      "page": "idbrmfit",
      "title": "Infectious disease modelling wrapper for brm",
      "topics": [
        "idbrmfit"
      ]
    },
    {
      "page": "idbrms_stan_chunk",
      "title": "Read in a idbrms Stan code chunk",
      "topics": [
        "idbrms_stan_chunk"
      ]
    },
    {
      "page": "idbrms_version_stanvar",
      "title": "Label a idbrms stan model with a version indicator",
      "topics": [
        "idbrms_version_stanvar"
      ]
    },
    {
      "page": "prepare",
      "title": "Prepare data for modelling with idbrm",
      "topics": [
        "prepare",
        "prepare.default"
      ]
    },
    {
      "page": "prepare.idbrms_convolution",
      "title": "Prepare data for fitting using a convolution model",
      "topics": [
        "prepare.idbrms_convolution"
      ]
    }
  ],
  "_readme": "https://github.com/epiforecasts/idbrms/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "backports",
    "bayesplot",
    "BH",
    "bridgesampling",
    "brms",
    "Brobdingnag",
    "callr",
    "checkmate",
    "cli",
    "coda",
    "codetools",
    "cpp11",
    "data.table",
    "desc",
    "digest",
    "distributional",
    "dplyr",
    "farver",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "ggridges",
    "globals",
    "glue",
    "gridExtra",
    "gtable",
    "inline",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "listenv",
    "loo",
    "magrittr",
    "Matrix",
    "matrixStats",
    "mgcv",
    "mvtnorm",
    "nleqslv",
    "nlme",
    "numDeriv",
    "otel",
    "parallelly",
    "pillar",
    "pkgbuild",
    "pkgconfig",
    "plyr",
    "posterior",
    "processx",
    "ps",
    "purrr",
    "QuickJSR",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "RcppParallel",
    "reshape2",
    "rlang",
    "rstan",
    "rstantools",
    "S7",
    "scales",
    "StanHeaders",
    "stringi",
    "stringr",
    "tensorA",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "idbrms",
  "_universes": [
    "epiforecasts",
    "seabbs"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:50:03.000Z",
      "distro": "resolute",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/3e977b350a97fb1e5369c036c9169074c872c4be9a3e43317eb0df9546dc2a13",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:50:13.000Z",
      "distro": "resolute",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/7d6c3b664faeb6b48d4f78731cf50c2d167f769f99361c112853354b77690d70",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:49:30.000Z",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/f5d9a48ab77306d29f52fbf4286f049b77b5dc81e8a9c150c7213ea80de04931",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:48:49.000Z",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/669639c7f35837519826f838b735e19fc2a305495d97d4eead334132ca0a7af3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:50:17.000Z",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/04150e83c92054f6a0d7e1145a935feb79c4ec2cdad65ff4f32632b2b86c6d41",
      "status": "success",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:49:04.000Z",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/03bbecde0795cc0bd468f7a7ad2846611b7864f38d1a569c0a1625fc4c81ce6f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:49:05.000Z",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/6c0bee1e7790065a95e4b3e20cc11c018695ace2b83663d93c49d9b0dabbbc5a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.0.0.9000",
      "date": "2026-07-08T06:49:04.000Z",
      "commit": "f5a1c25fdedd95d5c6eb5d955df2d041687e534f",
      "fileid": "https://r2.ropensci.org/98ec536829c37b255cff0e47b241257bb560dbbedccb6807dc7a5c3991809052",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/epiforecasts/actions/runs/28923124837"
    }
  ]
}