Package: EpiSoon 0.3.1

Sam Abbott

EpiSoon: Forecast Cases Using Reproduction Numbers

To forecast the time-varying reproduction number and use this to forecast reported case counts. Includes tools to evaluate a range of models across samples and time series using proper scoring rules.

Authors:Sam Abbott [aut, cre], Nikos Bosse [aut], Joel Hellewell [aut], Katharine Sherratt [aut], James Munday [aut], Robin Thompson [aut], Aurelien Chateigner [aut], Sylvain Mareschal [aut], Andrea Rau [aut], Nathalie Vialaneix [aut], Michael DeWitt [aut], Sebastian Funk [aut]

EpiSoon_0.3.1.tar.gz
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EpiSoon_0.3.1.tgz(r-4.4-any)EpiSoon_0.3.1.tgz(r-4.3-any)
EpiSoon_0.3.1.tar.gz(r-4.5-noble)EpiSoon_0.3.1.tar.gz(r-4.4-noble)
EpiSoon_0.3.1.tgz(r-4.4-emscripten)EpiSoon_0.3.1.tgz(r-4.3-emscripten)
EpiSoon.pdf |EpiSoon.html
EpiSoon/json (API)
NEWS

# Install EpiSoon in R:
install.packages('EpiSoon', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiforecasts/episoon/issues

Datasets:

On CRAN:

case-forecastsforecasts

28 exports 7 stars 1.58 score 63 dependencies 1 dependents

Last updated 1 years agofrom:d8eb427000f403ca09543ce9eab54c35855256a1

Exports:%>%brms_modelbsts_modelcompare_modelscompare_timeseriesdraw_from_si_probevaluate_modelfable_modelforecast_casesforecast_cases_directlyforecast_modelforecast_rtforecastHybrid_modeliterative_case_forecastiterative_direct_case_forecastiterative_rt_forecastplot_compare_timeseriesplot_forecastplot_forecast_evaluationplot_scorespredict_casespredict_current_casesscore_case_forecastscore_forecaststackr_modelsummarise_case_forecastsummarise_forecastsummarise_scores

Dependencies:backportscheckmateclicodetoolscolorspacecowplotcpp11data.tabledigestdplyrevaluatefansifarverfurrrfuturegenericsggplot2globalsgluegtableHDIntervalhighrisobandknitrlabelinglatticelifecyclelistenvlubridatemagrittrMASSMatrixMetricsmgcvmunsellnlmeparallellypillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadillorlangscalesscoringRulesscoringutilsstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithrxfunyaml