Package: EpiSoon 0.3.1

Sam Abbott

EpiSoon: Forecast Cases Using Reproduction Numbers

To forecast the time-varying reproduction number and use this to forecast reported case counts. Includes tools to evaluate a range of models across samples and time series using proper scoring rules.

Authors:Sam Abbott [aut, cre], Nikos Bosse [aut], Joel Hellewell [aut], Katharine Sherratt [aut], James Munday [aut], Robin Thompson [aut], Aurelien Chateigner [aut], Sylvain Mareschal [aut], Andrea Rau [aut], Nathalie Vialaneix [aut], Michael DeWitt [aut], Sebastian Funk [aut]

EpiSoon_0.3.1.tar.gz


EpiSoon_0.3.1.tar.gz(r-4.6-any)
EpiSoon_0.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
EpiSoon/json (API)
NEWS

# Install 'EpiSoon' in R:
install.packages('EpiSoon', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiforecasts/episoon/issues

Datasets:

On CRAN:

Conda:

case-forecastsforecasts

4.79 score 7 stars 25 scripts 28 exports 58 dependencies

Last updated from:03a8b80001 (on v0.3.2). Checks:7 FAIL, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64FAIL182
source / vignettesOK288
linux-release-x86_64FAIL2211
macos-release-arm64FAIL87
macos-oldrel-arm64FAIL131
windows-develFAIL145
windows-releaseFAIL108
windows-oldrelFAIL71
wasm-releaseOK201

Exports:%>%brms_modelbsts_modelcompare_modelscompare_timeseriesdraw_from_si_probevaluate_modelfable_modelforecast_casesforecast_cases_directlyforecast_modelforecast_rtforecastHybrid_modeliterative_case_forecastiterative_direct_case_forecastiterative_rt_forecastlopensemble_modelplot_compare_timeseriesplot_forecastplot_forecast_evaluationplot_scorespredict_casespredict_current_casesscore_case_forecastscore_forecastsummarise_case_forecastsummarise_forecastsummarise_scores

Dependencies:backportscheckmateclicmdstanrcodetoolscowplotcpp11data.tabledigestdplyrevaluatefarverfurrrfuturegenericsggplot2globalsgluegtableHDIntervalhighrisobandknitrlabelinglifecyclelistenvlopensemblelubridatemagrittrMASSparallellypillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadillorlangS7scalesscoringRulesscoringutilsstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithrxfunyaml

Getting started

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Jun 04 2026.

Last update: 2023-03-01
Started: 2020-03-28