Package: EpiSoon 0.3.1
EpiSoon: Forecast Cases Using Reproduction Numbers
To forecast the time-varying reproduction number and use this to forecast reported case counts. Includes tools to evaluate a range of models across samples and time series using proper scoring rules.
Authors:
EpiSoon_0.3.1.tar.gz
EpiSoon_0.3.1.zip(r-4.5)EpiSoon_0.3.1.zip(r-4.4)EpiSoon_0.3.1.zip(r-4.3)
EpiSoon_0.3.1.tgz(r-4.4-any)EpiSoon_0.3.1.tgz(r-4.3-any)
EpiSoon_0.3.1.tar.gz(r-4.5-noble)EpiSoon_0.3.1.tar.gz(r-4.4-noble)
EpiSoon_0.3.1.tgz(r-4.4-emscripten)EpiSoon_0.3.1.tgz(r-4.3-emscripten)
EpiSoon.pdf |EpiSoon.html✨
EpiSoon/json (API)
NEWS
# Install 'EpiSoon' in R: |
install.packages('EpiSoon', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiforecasts/episoon/issues
- example_obs_cases - Example Observed Cases
- example_obs_rts - Example Observed Rts
- example_serial_interval - Example Serial Interval
Last updated 2 years agofrom:d8eb427000. Checks:ERROR: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | FAIL | Sep 23 2024 |
R-4.5-win | ERROR | Sep 23 2024 |
R-4.5-linux | ERROR | Sep 23 2024 |
R-4.4-win | ERROR | Sep 23 2024 |
R-4.4-mac | ERROR | Sep 23 2024 |
R-4.3-win | ERROR | Sep 23 2024 |
R-4.3-mac | ERROR | Sep 23 2024 |
Exports:%>%brms_modelbsts_modelcompare_modelscompare_timeseriesdraw_from_si_probevaluate_modelfable_modelforecast_casesforecast_cases_directlyforecast_modelforecast_rtforecastHybrid_modeliterative_case_forecastiterative_direct_case_forecastiterative_rt_forecastplot_compare_timeseriesplot_forecastplot_forecast_evaluationplot_scorespredict_casespredict_current_casesscore_case_forecastscore_forecaststackr_modelsummarise_case_forecastsummarise_forecastsummarise_scores
Dependencies:backportscheckmateclicodetoolscolorspacecowplotcpp11data.tabledigestdplyrevaluatefansifarverfurrrfuturegenericsggplot2globalsgluegtableHDIntervalhighrisobandknitrlabelinglatticelifecyclelistenvlubridatemagrittrMASSMatrixMetricsmgcvmunsellnlmeparallellypillarpkgconfigpurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadillorlangscalesscoringRulesscoringutilsstringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithrxfunyaml