Package: socialmixr 0.4.0

Sebastian Funk

socialmixr: Social Mixing Matrices for Infectious Disease Modelling

Provides methods for sampling contact matrices from diary data for use in infectious disease modelling, as discussed in Mossong et al. (2008) <doi:10.1371/journal.pmed.0050074>.

Authors:Sebastian Funk [aut, cre], Lander Willem [aut], Hugo Gruson [aut], Maria Bekker-Nielsen Dunbar [ctb], Carl A. B. Pearson [ctb], Sam Clifford [ctb], Christopher Jarvis [ctb], Alexis Robert [ctb], Niel Hens [ctb], Pietro Coletti [col, dtm]

socialmixr_0.4.0.tar.gz
socialmixr_0.4.0.zip(r-4.5)socialmixr_0.4.0.zip(r-4.4)socialmixr_0.4.0.zip(r-4.3)
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socialmixr.pdf |socialmixr.html
socialmixr/json (API)
NEWS

# Install 'socialmixr' in R:
install.packages('socialmixr', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epiforecasts/socialmixr/issues

Pkgdown:https://epiforecasts.io

Datasets:
  • polymod - Social contact data from 8 European countries

On CRAN:

9.80 score 38 stars 1 packages 230 scripts 557 downloads 6 mentions 16 exports 35 dependencies

Last updated 2 months agofrom:f82ca6207e (on v0.4.0). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winOKDec 18 2024
R-4.5-linuxOKDec 18 2024
R-4.4-winOKDec 18 2024
R-4.4-macOKDec 18 2024
R-4.3-winOKDec 18 2024
R-4.3-macOKDec 18 2024

Exports:checkcleancontact_matrixdownload_surveyget_citationget_surveylimits_to_agegroupslist_surveysload_surveymatrix_plotpop_agereduce_agegroupssurveysurvey_countrieswpp_agewpp_countries

Dependencies:askpasscachemclicountrycodecpp11curldata.tablefansifastmapgenericsgluehttrjsonlitelifecyclelubridatemagrittrmemoisemimeoaiopensslpillarpkgconfigplyrR6Rcpprlangstringistringrsystibbletimechangeutf8vctrswpp2017xml2

Introduction to socialmixr

Rendered fromsocialmixr.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2024-10-18
Started: 2022-06-16