Package: forecast.vocs 0.9.0
![](https://github.com/epiforecasts/forecast.vocs/raw/HEAD/man/figures/README-unnamed-chunk-8-1.png)
forecast.vocs: Forecast Case and Sequence Notifications using Variant of Concern Strain Dynamics
Contains models and tools to produce short-term forecasts for both case and sequence notifications assuming circulation of either one or two variants. Tools are also provided to allow the evaluation of the use of sequence data for short-term forecasts in both real-world settings and in user generated scenarios.
Authors:
forecast.vocs_0.9.0.tar.gz
forecast.vocs_0.9.0.zip(r-4.5)forecast.vocs_0.9.0.zip(r-4.4)forecast.vocs_0.9.0.zip(r-4.3)
forecast.vocs_0.9.0.tgz(r-4.4-any)forecast.vocs_0.9.0.tgz(r-4.3-any)
forecast.vocs_0.9.0.tar.gz(r-4.5-noble)forecast.vocs_0.9.0.tar.gz(r-4.4-noble)
forecast.vocs_0.9.0.tgz(r-4.4-emscripten)forecast.vocs_0.9.0.tgz(r-4.3-emscripten)
forecast.vocs.pdf |forecast.vocs.html✨
forecast.vocs/json (API)
NEWS
# Install 'forecast.vocs' in R: |
install.packages('forecast.vocs', repos = c('https://epiforecasts.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiforecasts/forecast.vocs/issues
- germany_covid19_delta_obs - Test positive COVID-19 cases and sequences in Germany
Last updated 1 years agofrom:eb475ff310. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 13 2024 |
R-4.5-win | WARNING | Aug 13 2024 |
R-4.5-linux | WARNING | Aug 13 2024 |
R-4.4-win | WARNING | Aug 13 2024 |
R-4.4-mac | WARNING | Aug 13 2024 |
R-4.3-win | WARNING | Aug 13 2024 |
R-4.3-mac | WARNING | Aug 13 2024 |
Exports:add_forecast_datesbp_launch_shinystancheck_observationsdefine_scenariosextract_forecast_datesfilter_by_availabilityforecastforecast_across_datesforecast_across_scenariosfv_as_data_listfv_dow_periodfv_examplefv_extract_forecastfv_initsfv_modelfv_posteriorfv_samplefv_score_forecastfv_tidy_posteriorgenerate_obsgenerate_obs_scenariolatest_obsplot_casesplot_defaultplot_growthplot_posteriorplot_rtplot_themeplot_voc_advantageplot_voc_fracquantiles_to_longsample_sequencessave_plotsunnest_posteriorupdate_obs_availabilityupdate_voc_label
Dependencies:abindbackportsbayesplotBHcallrcheckmateclicmdstanrcodetoolscolorspacedata.tabledescdigestdistributionaldplyrfansifarverfuturefuture.applygenericsggplot2ggridgesglobalsgluegridExtragtableinlineisobandjsonlitelabelinglatticelifecyclelistenvloomagrittrMASSMatrixmatrixStatsmgcvmunsellnlmenumDerivparallellypillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreshape2rlangrstanscalesStanHeadersstringistringrtensorAtibbletidyselectutf8vctrsviridisLitewithr